HL_4UJD_014

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

4UJD|1|A2|C|1305

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_014 not in the Motif Atlas

Homologous match to HL_5TBW_014

Geometric discrepancy: 0.2187

The information below is about HL_5TBW_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

4UJD|1|A2|U|1297
4UJD|1|A2|C|1298
4UJD|1|A2|U|1299
4UJD|1|A2|U|1300
4UJD|1|A2|G|1301
4UJD|1|A2|A|1302
4UJD|1|A2|A|1303
4UJD|1|A2|A|1304
4UJD|1|A2|C|1305
4UJD|1|A2|A|1306

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AB

60S RIBOSOMAL PROTEIN L3

Chain Aa

60S RIBOSOMAL PROTEIN L27A

Chain Ae

60S RIBOSOMAL PROTEIN L32