HL_4UJD_021
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 4UJD|1|A2|G|1574, 4UJD|1|A2|U|1575, 4UJD|1|A2|A|1579
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4UJD_021 not in the Motif Atlas
- Homologous match to HL_8P9A_132
- Geometric discrepancy: 0.2296
- The information below is about HL_8P9A_132
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.1
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 11
Unit IDs
4UJD|1|A2|A|1572
4UJD|1|A2|C|1573
4UJD|1|A2|G|1574
4UJD|1|A2|U|1575
4UJD|1|A2|G|1576
4UJD|1|A2|C|1577
4UJD|1|A2|A|1578
4UJD|1|A2|A|1579
4UJD|1|A2|A|1580
4UJD|1|A2|U|1581
Current chains
- Chain A2
- 28S Ribosomal RNA
Nearby chains
- Chain AB
- 60S RIBOSOMAL PROTEIN L3
- Chain AC
- 60S RIBOSOMAL PROTEIN L4
- Chain AP
- 60S RIBOSOMAL PROTEIN L17
- Chain Aj
- 60S RIBOSOMAL PROTEIN L37
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