HL_4UJD_032

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CAGCAGUUG

Length

9 nucleotides

Bulged bases

4UJD|1|A2|G|2398, 4UJD|1|A2|U|2402

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_032 not in the Motif Atlas

Geometric match to HL_7A0S_041

Geometric discrepancy: 0.3583

The information below is about HL_7A0S_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07145.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4UJD|1|A2|C|2396
4UJD|1|A2|A|2397
4UJD|1|A2|G|2398
4UJD|1|A2|C|2399
4UJD|1|A2|A|2400
4UJD|1|A2|G|2401
4UJD|1|A2|U|2402
4UJD|1|A2|U|2403
4UJD|1|A2|G|2404

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AP

60S RIBOSOMAL PROTEIN L17

Chain AR

60S RIBOSOMAL PROTEIN L19

Chain Al

60S RIBOSOMAL PROTEIN L39