HL_4UJD_038

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

4UJD|1|A2|U|2607

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_038 not in the Motif Atlas

Homologous match to HL_5TBW_037

Geometric discrepancy: 0.5012

The information below is about HL_5TBW_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4UJD|1|A2|G|2601
4UJD|1|A2|U|2602
4UJD|1|A2|U|2603
4UJD|1|A2|C|2604
4UJD|1|A2|U|2605
4UJD|1|A2|C|2606
4UJD|1|A2|U|2607
4UJD|1|A2|U|2608
4UJD|1|A2|U|2609

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AR

60S RIBOSOMAL PROTEIN L19

Chain AU

60S RIBOSOMAL PROTEIN L22