HL_4UJD_046

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GGUGC

Length

5 nucleotides

Bulged bases

4UJD|1|A2|G|3584

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_046 not in the Motif Atlas

Homologous match to HL_5TBW_045

Geometric discrepancy: 0.5836

The information below is about HL_5TBW_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55195.2

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

4UJD|1|A2|G|3583
4UJD|1|A2|G|3584
4UJD|1|A2|U|3585
4UJD|1|A2|G|3586
4UJD|1|A2|C|3587

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AR

60S RIBOSOMAL PROTEIN L19

Chain AW

60S RIBOSOMAL PROTEIN L24