HL_4UJD_048

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

4UJD|1|A2|C|3642

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_048 not in the Motif Atlas

Homologous match to HL_5TBW_047

Geometric discrepancy: 0.2074

The information below is about HL_5TBW_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4UJD|1|A2|C|3637
4UJD|1|A2|G|3638
4UJD|1|A2|C|3639
4UJD|1|A2|G|3640
4UJD|1|A2|G|3641
4UJD|1|A2|C|3642
4UJD|1|A2|G|3643

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AA

60S RIBOSOMAL PROTEIN L8

Chain AG

60S RIBOSOMAL PROTEIN L7A

Chain AN

60S RIBOSOMAL PROTEIN L15