HL_4UJD_050

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

4UJD|1|A2|A|3729

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_050 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.5572

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4UJD|1|A2|G|3726
4UJD|1|A2|U|3727
4UJD|1|A2|A|3728
4UJD|1|A2|A|3729
4UJD|1|A2|C|3730
4UJD|1|A2|U|3731
4UJD|1|A2|A|3732
4UJD|1|A2|U|3733
4UJD|1|A2|G|3734
4UJD|1|A2|A|3735
4UJD|1|A2|C|3736

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain BB

EIF5B

Chain C1

Small subunit ribosomal RNA; SSU rRNA