HL_4UJD_060

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GUGAAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_060 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3511

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4UJD|1|A2|G|4280
4UJD|1|A2|U|4281
4UJD|1|A2|G|4282
4UJD|1|A2|A|4283
4UJD|1|A2|A|4284
4UJD|1|A2|A|4285
4UJD|1|A2|G|4286
4UJD|1|A2|C|4287

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AD

60S RIBOSOMAL PROTEIN L5

Chain AT

60S RIBOSOMAL PROTEIN L21

Chain Ao

60S RIBOSOMAL PROTEIN L36A