HL_4UJD_062

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_062 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.3681

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4UJD|1|A2|C|4377
4UJD|1|A2|G|4378
4UJD|1|A2|U|4379
4UJD|1|A2|U|4380
4UJD|1|A2|C|4381
4UJD|1|A2|A|4382
4UJD|1|A2|U|4383
4UJD|1|A2|A|4384
4UJD|1|A2|G|4385

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AI

60S RIBOSOMAL PROTEIN L10

Chain Am

UBIQUITIN-60S RIBOSOMAL PROTEIN L40

Chain BB

EIF5B