HL_4UJD_063

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

AAGCAGAAUU

Length

10 nucleotides

Bulged bases

4UJD|1|A2|G|4435

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|A|4433
4UJD|1|A2|A|4434
4UJD|1|A2|G|4435
4UJD|1|A2|C|4436
4UJD|1|A2|A|4437
4UJD|1|A2|G|4438
4UJD|1|A2|A|4439
4UJD|1|A2|A|4440
4UJD|1|A2|U|4441
4UJD|1|A2|U|4442

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AH

60S RIBOSOMAL PROTEIN L9

Chain Am

UBIQUITIN-60S RIBOSOMAL PROTEIN L40