HL_4UJD_068

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

4UJD|1|A2|G|4654

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_068 not in the Motif Atlas

Homologous match to HL_5TBW_067

Geometric discrepancy: 0.2112

The information below is about HL_5TBW_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

4UJD|1|A2|C|4648
4UJD|1|A2|U|4649
4UJD|1|A2|G|4650
4UJD|1|A2|A|4651
4UJD|1|A2|A|4652
4UJD|1|A2|C|4653
4UJD|1|A2|G|4654
4UJD|1|A2|C|4655
4UJD|1|A2|C|4656
4UJD|1|A2|U|4657
4UJD|1|A2|C|4658
4UJD|1|A2|U|4659
4UJD|1|A2|A|4660
4UJD|1|A2|A|4661
4UJD|1|A2|G|4662

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AH

60S RIBOSOMAL PROTEIN L9

Chain AO

60S RIBOSOMAL PROTEIN L13A

Chain Am

UBIQUITIN-60S RIBOSOMAL PROTEIN L40