HL_4UJD_073
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- UGAAUUGCAGGACACAUUGA
- Length
- 20 nucleotides
- Bulged bases
- 4UJD|1|A3|C|83, 4UJD|1|A3|U|85
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4UJD_073 not in the Motif Atlas
- Homologous match to HL_8C3A_230
- Geometric discrepancy: 0.2945
- The information below is about HL_8C3A_230
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
4UJD|1|A3|U|69
4UJD|1|A3|G|70
4UJD|1|A3|A|71
4UJD|1|A3|A|72
4UJD|1|A3|U|73
4UJD|1|A3|U|74
4UJD|1|A3|G|75
4UJD|1|A3|C|76
4UJD|1|A3|A|77
4UJD|1|A3|G|78
4UJD|1|A3|G|79
4UJD|1|A3|A|80
4UJD|1|A3|C|81
4UJD|1|A3|A|82
4UJD|1|A3|C|83
4UJD|1|A3|A|84
4UJD|1|A3|U|85
4UJD|1|A3|U|86
4UJD|1|A3|G|87
4UJD|1|A3|A|88
Current chains
- Chain A3
- 5.8S Ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain AY
- 60S RIBOSOMAL PROTEIN L26
- Chain Ah
- 60S RIBOSOMAL PROTEIN L35
- Chain Aj
- 60S RIBOSOMAL PROTEIN L37
- Chain Al
- 60S RIBOSOMAL PROTEIN L39
Coloring options: