HL_4UJD_078

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

4UJD|1|BA|C|17, 4UJD|1|BA|G|18, 4UJD|1|BA|G|19, 4UJD|1|BA|U|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_078 not in the Motif Atlas

Homologous match to HL_3TUP_001

Geometric discrepancy: 0.251

The information below is about HL_3TUP_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

4UJD|1|BA|C|13
4UJD|1|BA|A|14
4UJD|1|BA|G|15
4UJD|1|BA|U|16
4UJD|1|BA|C|17
4UJD|1|BA|G|18
4UJD|1|BA|G|19
4UJD|1|BA|U|20
4UJD|1|BA|A|21
4UJD|1|BA|G|22

Current chains

Chain BA

TRNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain Ao

60S RIBOSOMAL PROTEIN L36A

Chain BC

Internal ribosome entry site; IRES