HL_4UJD_090

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

4UJD|1|C1|U|160, 4UJD|1|C1|U|161

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_090 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.2634

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4UJD|1|C1|G|156
4UJD|1|C1|U|157
4UJD|1|C1|A|158
4UJD|1|C1|A|159
4UJD|1|C1|U|160
4UJD|1|C1|U|161
4UJD|1|C1|C|162

Current chains

Chain C1

18S Ribosomal RNA

Nearby chains

Chain CG

40S RIBOSOMAL PROTEIN ES6

Chain CY

40S RIBOSOMAL PROTEIN ES24