HL_4UJD_094

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

4UJD|1|C1|G|385

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_094 not in the Motif Atlas

Geometric match to HL_4WSM_226

Geometric discrepancy: 0.3942

The information below is about HL_4WSM_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22031.2

Basepair signature

cWW-cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4UJD|1|C1|G|377
4UJD|1|C1|U|378
4UJD|1|C1|C|379
4UJD|1|C1|G|380
4UJD|1|C1|C|381
4UJD|1|C1|C|382
4UJD|1|C1|G|383
4UJD|1|C1|U|384
4UJD|1|C1|G|385
4UJD|1|C1|C|386
4UJD|1|C1|C|387

Current chains

Chain C1

18S Ribosomal RNA

Nearby chains

Chain CI

40S RIBOSOMAL PROTEIN ES8

Chain CL

40S RIBOSOMAL PROTEIN US17