HL_4UJD_095

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_095 not in the Motif Atlas

Homologous match to HL_4V88_194

Geometric discrepancy: 0.1509

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

4UJD|1|C1|U|416
4UJD|1|C1|C|417
4UJD|1|C1|A|418
4UJD|1|C1|G|419
4UJD|1|C1|G|420
4UJD|1|C1|G|421

Current chains

Chain C1

18S Ribosomal RNA

Nearby chains

Chain CC

40S RIBOSOMAL PROTEIN US5

Chain CJ

40S RIBOSOMAL PROTEIN US4

Chain CL

40S RIBOSOMAL PROTEIN US17

Chain CW

40S RIBOSOMAL PROTEIN US8