HL_4UJD_103

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CCCGAGCCG

Length

9 nucleotides

Bulged bases

4UJD|1|C1|C|834, 4UJD|1|C1|C|835, 4UJD|1|C1|A|837, 4UJD|1|C1|C|839, 4UJD|1|C1|C|840

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_103 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.388

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4UJD|1|C1|C|833
4UJD|1|C1|C|834
4UJD|1|C1|C|835
4UJD|1|C1|G|836
4UJD|1|C1|A|837
4UJD|1|C1|G|838
4UJD|1|C1|C|839
4UJD|1|C1|C|840
4UJD|1|C1|G|841

Current chains

Chain C1

18S Ribosomal RNA

Nearby chains

Chain CE

40S RIBOSOMAL PROTEIN ES4

Chain CJ

40S RIBOSOMAL PROTEIN US4

Chain CY

40S RIBOSOMAL PROTEIN ES24