HL_4UJD_109

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_109 not in the Motif Atlas

Homologous match to HL_4V88_210

Geometric discrepancy: 0.1617

The information below is about HL_4V88_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4UJD|1|C1|G|1141
4UJD|1|C1|G|1142
4UJD|1|C1|A|1143
4UJD|1|C1|A|1144
4UJD|1|C1|A|1145
4UJD|1|C1|C|1146

Current chains

Chain C1

18S Ribosomal RNA

Nearby chains

Chain CC

40S RIBOSOMAL PROTEIN US5

Chain CW

40S RIBOSOMAL PROTEIN US8

Chain Ca

40S RIBOSOMAL PROTEIN ES26