HL_4UJD_134

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GAGCGAUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_134 not in the Motif Atlas

Geometric match to HL_8KAL_001

Geometric discrepancy: 0.3279

The information below is about HL_8KAL_001

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4UJD|1|C1|G|1352
4UJD|1|C1|A|1353
4UJD|1|C1|G|1354
4UJD|1|C1|C|1355
4UJD|1|C1|G|1356
4UJD|1|C1|A|1357
4UJD|1|C1|U|1358
4UJD|1|C1|U|1359

Current chains

Chain C1

18S Ribosomal RNA

Nearby chains

Chain CA

40S RIBOSOMAL PROTEIN US2

Chain CC

40S RIBOSOMAL PROTEIN US5