HL_4UJE_001

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UAAGCAUA

Length

8 nucleotides

Bulged bases

4UJE|1|A2|A|39

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJE_001 not in the Motif Atlas

Geometric match to HL_4WF9_006

Geometric discrepancy: 0.269

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

4UJE|1|A2|U|37
4UJE|1|A2|A|38
4UJE|1|A2|A|39
4UJE|1|A2|G|40
4UJE|1|A2|C|41
4UJE|1|A2|A|42
4UJE|1|A2|U|43
4UJE|1|A2|A|44

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CN

60S RIBOSOMAL PROTEIN L15

Chain Ca

60S RIBOSOMAL PROTEIN L27A

Chain Co

60S RIBOSOMAL PROTEIN L36A