HL_4UJE_014

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

4UJE|1|A2|C|1305

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJE_014 not in the Motif Atlas

Homologous match to HL_5TBW_014

Geometric discrepancy: 0.2187

The information below is about HL_5TBW_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

4UJE|1|A2|U|1297
4UJE|1|A2|C|1298
4UJE|1|A2|U|1299
4UJE|1|A2|U|1300
4UJE|1|A2|G|1301
4UJE|1|A2|A|1302
4UJE|1|A2|A|1303
4UJE|1|A2|A|1304
4UJE|1|A2|C|1305
4UJE|1|A2|A|1306

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CB

60S RIBOSOMAL PROTEIN L3

Chain Ca

60S RIBOSOMAL PROTEIN L27A

Chain Ce

60S RIBOSOMAL PROTEIN L32