HL_4UJE_025

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CUGGCGUG

Length

8 nucleotides

Bulged bases

4UJE|1|A2|G|1800

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJE_025 not in the Motif Atlas

Homologous match to HL_8C3A_024

Geometric discrepancy: 0.3725

The information below is about HL_8C3A_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

4UJE|1|A2|C|1795
4UJE|1|A2|U|1796
4UJE|1|A2|G|1797
4UJE|1|A2|G|1798
4UJE|1|A2|C|1799
4UJE|1|A2|G|1800
4UJE|1|A2|U|1801
4UJE|1|A2|G|1802

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CD

60S RIBOSOMAL PROTEIN L5

Chain CT

60S RIBOSOMAL PROTEIN L21

Chain Cb

60S RIBOSOMAL PROTEIN L29