HL_4UJE_031

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

4UJE|1|A2|A|2359, 4UJE|1|A2|C|2360

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJE_031 not in the Motif Atlas

Homologous match to HL_5TBW_031

Geometric discrepancy: 0.2074

The information below is about HL_5TBW_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

4UJE|1|A2|A|2353
4UJE|1|A2|C|2354
4UJE|1|A2|G|2355
4UJE|1|A2|A|2356
4UJE|1|A2|G|2357
4UJE|1|A2|A|2358
4UJE|1|A2|A|2359
4UJE|1|A2|C|2360
4UJE|1|A2|U|2361

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CR

60S RIBOSOMAL PROTEIN L19

Chain Cd

60S RIBOSOMAL PROTEIN L31