HL_4UJE_038

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

4UJE|1|A2|U|2607

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJE_038 not in the Motif Atlas

Homologous match to HL_5TBW_037

Geometric discrepancy: 0.5012

The information below is about HL_5TBW_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4UJE|1|A2|G|2601
4UJE|1|A2|U|2602
4UJE|1|A2|U|2603
4UJE|1|A2|C|2604
4UJE|1|A2|U|2605
4UJE|1|A2|C|2606
4UJE|1|A2|U|2607
4UJE|1|A2|U|2608
4UJE|1|A2|U|2609

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CR

60S RIBOSOMAL PROTEIN L19

Chain CU

60S RIBOSOMAL PROTEIN L22