HL_4UJE_039

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GUUCGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJE_039 not in the Motif Atlas

Homologous match to HL_8C3A_038

Geometric discrepancy: 0.5417

The information below is about HL_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75033.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

4UJE|1|A2|G|2641
4UJE|1|A2|U|2642
4UJE|1|A2|U|2643
4UJE|1|A2|C|2644
4UJE|1|A2|G|2645
4UJE|1|A2|C|2646
4UJE|1|A2|C|2647

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CR

60S RIBOSOMAL PROTEIN L19

Chain Cp

60S RIBOSOMAL PROTEIN L37A