HL_4UJE_044

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4UJE|1|A2|U|2851

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJE_044 not in the Motif Atlas

Homologous match to HL_8C3A_043

Geometric discrepancy: 0.1623

The information below is about HL_8C3A_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4UJE|1|A2|C|2849
4UJE|1|A2|U|2850
4UJE|1|A2|U|2851
4UJE|1|A2|C|2852
4UJE|1|A2|G|2853
4UJE|1|A2|G|2854

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain B1

Small subunit ribosomal RNA; SSU rRNA

Chain Cn

60S RIBOSOMAL PROTEIN L41

Chain Cp

60S RIBOSOMAL PROTEIN L37A