HL_4UJE_048

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

4UJE|1|A2|C|3642

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJE_048 not in the Motif Atlas

Homologous match to HL_5TBW_047

Geometric discrepancy: 0.2074

The information below is about HL_5TBW_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4UJE|1|A2|C|3637
4UJE|1|A2|G|3638
4UJE|1|A2|C|3639
4UJE|1|A2|G|3640
4UJE|1|A2|G|3641
4UJE|1|A2|C|3642
4UJE|1|A2|G|3643

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CA

60S RIBOSOMAL PROTEIN L8

Chain CG

60S RIBOSOMAL PROTEIN L7A

Chain CN

60S RIBOSOMAL PROTEIN L15