HL_4UJE_051

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

4UJE|1|A2|U|3771

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJE_051 not in the Motif Atlas

Homologous match to HL_5TBW_050

Geometric discrepancy: 0.2245

The information below is about HL_5TBW_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

4UJE|1|A2|U|3765
4UJE|1|A2|C|3766
4UJE|1|A2|U|3767
4UJE|1|A2|A|3768
4UJE|1|A2|A|3769
4UJE|1|A2|U|3770
4UJE|1|A2|U|3771
4UJE|1|A2|A|3772
4UJE|1|A2|G|3773

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain B1

Small subunit ribosomal RNA; SSU rRNA

Chain CV

60S RIBOSOMAL PROTEIN L23