HL_4UJE_078

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

4UJE|1|AV|C|17, 4UJE|1|AV|G|18, 4UJE|1|AV|G|19, 4UJE|1|AV|U|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJE_078 not in the Motif Atlas

Homologous match to HL_3TUP_001

Geometric discrepancy: 0.2521

The information below is about HL_3TUP_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

4UJE|1|AV|C|13
4UJE|1|AV|A|14
4UJE|1|AV|G|15
4UJE|1|AV|U|16
4UJE|1|AV|C|17
4UJE|1|AV|G|18
4UJE|1|AV|G|19
4UJE|1|AV|U|20
4UJE|1|AV|A|21
4UJE|1|AV|G|22

Current chains

Chain AV

TRNA-LYS

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain CJ

60S RIBOSOMAL PROTEIN L11

Chain Co

60S RIBOSOMAL PROTEIN L36A