HL_4UJE_090

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

4UJE|1|B1|G|385

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJE_090 not in the Motif Atlas

Geometric match to HL_4WSM_226

Geometric discrepancy: 0.3942

The information below is about HL_4WSM_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22031.2

Basepair signature

cWW-cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4UJE|1|B1|G|377
4UJE|1|B1|U|378
4UJE|1|B1|C|379
4UJE|1|B1|G|380
4UJE|1|B1|C|381
4UJE|1|B1|C|382
4UJE|1|B1|G|383
4UJE|1|B1|U|384
4UJE|1|B1|G|385
4UJE|1|B1|C|386
4UJE|1|B1|C|387

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain BI

40S RIBOSOMAL PROTEIN S8

Chain BL

40S RIBOSOMAL PROTEIN S11