HL_4UJE_091

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJE_091 not in the Motif Atlas

Homologous match to HL_4V88_194

Geometric discrepancy: 0.1509

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

4UJE|1|B1|U|416
4UJE|1|B1|C|417
4UJE|1|B1|A|418
4UJE|1|B1|G|419
4UJE|1|B1|G|420
4UJE|1|B1|G|421

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain BC

40S RIBOSOMAL PROTEIN S2

Chain BJ

40S RIBOSOMAL PROTEIN S9

Chain BL

40S RIBOSOMAL PROTEIN S11

Chain BW

40S RIBOSOMAL PROTEIN S15A