HL_4UJE_097

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJE_097 not in the Motif Atlas

Homologous match to HL_4V88_200

Geometric discrepancy: 0.5444

The information below is about HL_4V88_200

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4UJE|1|B1|C|618
4UJE|1|B1|A|619
4UJE|1|B1|G|620
4UJE|1|B1|C|621
4UJE|1|B1|C|622
4UJE|1|B1|G|623

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain AX

Messenger RNA

Chain BX

40S RIBOSOMAL PROTEIN S23

Chain Be

40S RIBOSOMAL PROTEIN S30