HL_4UJE_101

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJE_101 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.2595

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

4UJE|1|B1|A|957
4UJE|1|B1|G|958
4UJE|1|B1|G|959
4UJE|1|B1|U|960
4UJE|1|B1|G|961
4UJE|1|B1|A|962
4UJE|1|B1|A|963
4UJE|1|B1|A|964
4UJE|1|B1|U|965
4UJE|1|B1|U|966

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain AW

Transfer RNA; tRNA

Chain AX

Messenger RNA

Chain BF

40S RIBOSOMAL PROTEIN S5

Chain BO

40S RIBOSOMAL PROTEIN S14