HL_4UJE_105

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJE_105 not in the Motif Atlas

Homologous match to HL_4V88_210

Geometric discrepancy: 0.1618

The information below is about HL_4V88_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4UJE|1|B1|G|1141
4UJE|1|B1|G|1142
4UJE|1|B1|A|1143
4UJE|1|B1|A|1144
4UJE|1|B1|A|1145
4UJE|1|B1|C|1146

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain BC

40S RIBOSOMAL PROTEIN S2

Chain BW

40S RIBOSOMAL PROTEIN S15A

Chain Ba

40S RIBOSOMAL PROTEIN S26