HL_4UJE_118

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

4UJE|1|A2|C|207

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJE_118 not in the Motif Atlas

Homologous match to HL_8P9A_117

Geometric discrepancy: 0.1676

The information below is about HL_8P9A_117

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

4UJE|1|A2|U|201
4UJE|1|A2|C|202
4UJE|1|A2|U|203
4UJE|1|A2|G|204
4UJE|1|A2|A|205
4UJE|1|A2|U|206
4UJE|1|A2|C|207
4UJE|1|A2|G|208

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CC

60S RIBOSOMAL PROTEIN L4

Chain CY

60S RIBOSOMAL PROTEIN L26

Chain Ce

60S RIBOSOMAL PROTEIN L32