HL_4UJE_129

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GAGCGAUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJE_129 not in the Motif Atlas

Geometric match to HL_8KAL_001

Geometric discrepancy: 0.328

The information below is about HL_8KAL_001

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4UJE|1|B1|G|1352
4UJE|1|B1|A|1353
4UJE|1|B1|G|1354
4UJE|1|B1|C|1355
4UJE|1|B1|G|1356
4UJE|1|B1|A|1357
4UJE|1|B1|U|1358
4UJE|1|B1|U|1359

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain BA

40S RIBOSOMAL PROTEIN SA

Chain BC

40S RIBOSOMAL PROTEIN S2