HL_4UJE_133

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

4UJE|1|A2|G|2398, 4UJE|1|A2|U|2402

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJE_133 not in the Motif Atlas

Homologous match to HL_8P9A_144

Geometric discrepancy: 0.3297

The information below is about HL_8P9A_144

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

4UJE|1|A2|A|2397
4UJE|1|A2|G|2398
4UJE|1|A2|C|2399
4UJE|1|A2|A|2400
4UJE|1|A2|G|2401
4UJE|1|A2|U|2402
4UJE|1|A2|U|2403

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CP

60S RIBOSOMAL PROTEIN L17

Chain CR

60S RIBOSOMAL PROTEIN L19

Chain Cl

60S RIBOSOMAL PROTEIN L39