HL_4UJE_137

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

4UJE|1|A2|C|4978, 4UJE|1|A2|U|4981, 4UJE|1|A2|C|4982

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJE_137 not in the Motif Atlas

Geometric match to HL_8P9A_179

Geometric discrepancy: 0.3339

The information below is about HL_8P9A_179

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_65256.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

4UJE|1|A2|C|4976
4UJE|1|A2|U|4977
4UJE|1|A2|C|4978
4UJE|1|A2|C|4979
4UJE|1|A2|C|4980
4UJE|1|A2|U|4981
4UJE|1|A2|C|4982
4UJE|1|A2|G|4983

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain BI

40S RIBOSOMAL PROTEIN S8

Chain CU

60S RIBOSOMAL PROTEIN L22