HL_4UJE_141

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

4UJE|1|B1|U|1300, 4UJE|1|B1|G|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJE_141 not in the Motif Atlas

Homologous match to HL_8CRE_217

Geometric discrepancy: 0.2249

The information below is about HL_8CRE_217

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4UJE|1|B1|A|1295
4UJE|1|B1|U|1296
4UJE|1|B1|U|1297
4UJE|1|B1|G|1298
4UJE|1|B1|A|1299
4UJE|1|B1|U|1300
4UJE|1|B1|A|1301
4UJE|1|B1|G|1302
4UJE|1|B1|C|1303
4UJE|1|B1|U|1304

Current chains

Chain B1

18S Ribosomal RNA

Nearby chains

Chain BP

40S RIBOSOMAL PROTEIN S15

Chain Bd

40S RIBOSOMAL PROTEIN S29

Chain Bf

UBIQUITIN-40S RIBOSOMAL PROTEIN S27A