HL_4UY8_026

3D structure

PDB id

4UY8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

4UY8|1|A|U|958, 4UY8|1|A|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UY8_026 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1157

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

4UY8|1|A|U|955
4UY8|1|A|G|956
4UY8|1|A|C|957
4UY8|1|A|U|958
4UY8|1|A|A|959
4UY8|1|A|A|960
4UY8|1|A|C|961
4UY8|1|A|G|962

Current chains

Chain A

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain M

50S RIBOSOMAL PROTEIN L16