HL_4UY8_036

3D structure

PDB id

4UY8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

4UY8|1|A|A|1453, 4UY8|1|A|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UY8_036 not in the Motif Atlas

Geometric match to HL_5J7L_169

Geometric discrepancy: 0.2145

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4UY8|1|A|C|1451
4UY8|1|A|G|1452
4UY8|1|A|A|1453
4UY8|1|A|C|1454
4UY8|1|A|G|1455
4UY8|1|A|G|1456
4UY8|1|A|U|1457
4UY8|1|A|U|1458
4UY8|1|A|G|1459

Current chains

Chain A

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain N

50S RIBOSOMAL PROTEIN L17