HL_4UY8_040

3D structure

PDB id

4UY8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

4UY8|1|A|A|1614, 4UY8|1|A|A|1616, 4UY8|1|A|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UY8_040 not in the Motif Atlas

Homologous match to HL_4WF9_038

Geometric discrepancy: 0.1198

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

4UY8|1|A|C|1612
4UY8|1|A|G|1613
4UY8|1|A|A|1614
4UY8|1|A|C|1615
4UY8|1|A|A|1616
4UY8|1|A|C|1617
4UY8|1|A|A|1618
4UY8|1|A|G|1619

Current chains

Chain A

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34

Chain 7

TRYPTOPHANASE

Chain S

50S RIBOSOMAL PROTEIN L22