HL_4UY8_050

3D structure

PDB id

4UY8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4UY8|1|A|A|2030, 4UY8|1|A|A|2031, 4UY8|1|A|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UY8_050 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1199

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

4UY8|1|A|G|2027
4UY8|1|A|U|2028
4UY8|1|A|G|2029
4UY8|1|A|A|2030
4UY8|1|A|A|2031
4UY8|1|A|G|2032
4UY8|1|A|A|2033
4UY8|1|A|U|2034
4UY8|1|A|G|2035
4UY8|1|A|C|2036

Current chains

Chain A

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain 0

50S RIBOSOMAL PROTEIN L32

Chain D

50S RIBOSOMAL PROTEIN L3

Chain R

50S RIBOSOMAL PROTEIN L21