HL_4UY8_053

3D structure

PDB id

4UY8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4UY8|1|A|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UY8_053 not in the Motif Atlas

Homologous match to HL_4WF9_049

Geometric discrepancy: 0.0867

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

4UY8|1|A|C|2248
4UY8|1|A|U|2249
4UY8|1|A|G|2250
4UY8|1|A|G|2251
4UY8|1|A|G|2252
4UY8|1|A|G|2253
4UY8|1|A|C|2254
4UY8|1|A|G|2255
4UY8|1|A|G|2256

Current chains

Chain A

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain M

50S RIBOSOMAL PROTEIN L16

Chain V

Transfer RNA; tRNA

Chain W

50S RIBOSOMAL PROTEIN L27