3D structure

PDB id
4UY8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CUGAAAGCAUCUAAG
Length
15 nucleotides
Bulged bases
4UY8|1|A|G|2751, 4UY8|1|A|C|2755
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4UY8_066 not in the Motif Atlas
Homologous match to HL_5J7L_199
Geometric discrepancy: 0.0823
The information below is about HL_5J7L_199
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_74055.2
Basepair signature
cWW-tWH-cWH-tSH-tHW-tHW-tSW
Number of instances in this motif group
7

Unit IDs

4UY8|1|A|C|2745
4UY8|1|A|U|2746
4UY8|1|A|G|2747
4UY8|1|A|A|2748
4UY8|1|A|A|2749
4UY8|1|A|A|2750
4UY8|1|A|G|2751
4UY8|1|A|C|2752
4UY8|1|A|A|2753
4UY8|1|A|U|2754
4UY8|1|A|C|2755
4UY8|1|A|U|2756
4UY8|1|A|A|2757
4UY8|1|A|A|2758
4UY8|1|A|G|2759

Current chains

Chain A
RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain 4
50S RIBOSOMAL PROTEIN L36
Chain G
50S RIBOSOMAL PROTEIN L6
Chain J
50S RIBOSOMAL PROTEIN L13

Coloring options:


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