HL_4V42_004

3D structure

PDB id

4V42 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the ribosome at 5.5 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CAG(H2U)(H2U)GGGAG

Length

10 nucleotides

Bulged bases

4V42|1|AC|G|18, 4V42|1|AC|G|19

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V42_004 not in the Motif Atlas

Geometric match to HL_2CSX_001

Geometric discrepancy: 0.1231

The information below is about HL_2CSX_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_37101.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V42|1|AC|C|13
4V42|1|AC|A|14
4V42|1|AC|G|15
4V42|1|AC|H2U|16
4V42|1|AC|H2U|17
4V42|1|AC|G|18
4V42|1|AC|G|19
4V42|1|AC|G|20
4V42|1|AC|A|21
4V42|1|AC|G|22

Current chains

Chain AC

TRNA(PHE)

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BG

50S RIBOSOMAL PROTEIN L5