HL_4V42_008
3D structure
- PDB id
- 4V42 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the ribosome at 5.5 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 5.5 Å
Loop
- Sequence
- AUUUUUAUU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V42_008 not in the Motif Atlas
- Geometric match to HL_3RG5_006
- Geometric discrepancy: 0.3342
- The information below is about HL_3RG5_006
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- tRNA anticodon loop
- Motif group
- HL_45359.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
4V42|1|AD|A|31
4V42|1|AD|U|32
4V42|1|AD|U|33
4V42|1|AD|U|34
4V42|1|AD|U|35
4V42|1|AD|U|36
4V42|1|AD|A|37
4V42|1|AD|U|38
4V42|1|AD|U|39
Current chains
- Chain AD
- TRNA(PHE)
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AC
- TRNA(PHE)
- Chain AJ
- 30S RIBOSOMAL PROTEIN S7
- Chain AN
- 30S RIBOSOMAL PROTEIN S11
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