HL_4V49_047

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

4V49|1|B0|G|319, 4V49|1|B0|A|320, 4V49|1|B0|A|322

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V49_047 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.3229

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

4V49|1|B0|C|316
4V49|1|B0|U|317
4V49|1|B0|G|318
4V49|1|B0|G|319
4V49|1|B0|A|320
4V49|1|B0|A|321
4V49|1|B0|A|322
4V49|1|B0|G|323

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BQ

50S ribosomal protein L22

Chain BS

50S ribosomal protein L24