HL_4V49_049

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

GUGAGAGUC

Length

9 nucleotides

Bulged bases

4V49|1|B0|G|340, 4V49|1|B0|A|341, 4V49|1|B0|G|342

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V49_049 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.5348

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

4V49|1|B0|G|338
4V49|1|B0|U|339
4V49|1|B0|G|340
4V49|1|B0|A|341
4V49|1|B0|G|342
4V49|1|B0|A|343
4V49|1|B0|G|344
4V49|1|B0|U|345
4V49|1|B0|C|346

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BC

50S ribosomal protein L4

Chain BS

50S ribosomal protein L24