HL_4V4A_018

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4A_018 not in the Motif Atlas

Geometric match to HL_4LFB_014

Geometric discrepancy: 0.0754

The information below is about HL_4LFB_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V4A|1|AA|G|840
4V4A|1|AA|C|841
4V4A|1|AA|U|842
4V4A|1|AA|C|843
4V4A|1|AA|A|844
4V4A|1|AA|A|845
4V4A|1|AA|C|846

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AF

30S ribosomal protein S6

Chain AR

30S ribosomal protein S18